Multistrand

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Overview

What is Multistrand?

Key Features

  • Kinetic simulations of nucleic acids as random walk on thermodynamic energy model
  • Supports multiple interacting strands
  • Equilibrium consistent with NUPACK
  • Various usage modes to study kinetic trajectories
  • Distributed as a Python package
  • MIT License
  We want your feedback!
Bug reports, success stories, help inquiries, feature requests... send them to help@multistrand.org


  If you use Multistrand in your research please cite one or more of the following:
Joseph M. Schaeffer (2013) Stochastic simulation of the kinetics of multiple interacting nucleic acid strands. Dissertation (Ph.D.), California Institute of Technology.
Joseph M. Schaeffer, Chris Thachuk, Erik Winfree (2015) Stochastic simulation of the kinetics of multiple interacting nucleic acid strands. DNA Computing and Molecular Programming (DNA21), Lecture Notes in Computer Science (LNCS) volume 9211, pp 194-211.
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Installation

Getting Multistrand

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Tutorials

How to use Multistrand

  Interactive versions of these tutorials are available.

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Contact

help@multistrand.org
DNA and Natural Algorithms Group @ Caltech